graphical user interface (gui) tool of the simulation system Search Results


charmm graphical user interface (gui) platform  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc charmm graphical user interface (gui) platform
Charmm Graphical User Interface (Gui) Platform, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/charmm graphical user interface (gui) platform/product/Molecular Dynamics Inc
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charmm graphical user interface (gui) platform - by Bioz Stars, 2026-03
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graphic user interface (gui) environment  (MathWorks Inc)
90
MathWorks Inc graphic user interface (gui) environment
Graphic User Interface (Gui) Environment, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/graphic user interface (gui) environment/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
graphic user interface (gui) environment - by Bioz Stars, 2026-03
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propka graphical user interface (gui)  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc propka graphical user interface (gui)
The <t>PROPKA</t> <t>GUI</t> . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.
Propka Graphical User Interface (Gui), supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/propka graphical user interface (gui)/product/Molecular Dynamics Inc
Average 90 stars, based on 1 article reviews
propka graphical user interface (gui) - by Bioz Stars, 2026-03
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auto-interactive md graphical user interface (gui)  (Molecular Dynamics Inc)
90
Molecular Dynamics Inc auto-interactive md graphical user interface (gui)
The <t>PROPKA</t> <t>GUI</t> . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.
Auto Interactive Md Graphical User Interface (Gui), supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/auto-interactive md graphical user interface (gui)/product/Molecular Dynamics Inc
Average 90 stars, based on 1 article reviews
auto-interactive md graphical user interface (gui) - by Bioz Stars, 2026-03
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vehicle system simulator (vss)  (MathWorks Inc)
90
MathWorks Inc vehicle system simulator (vss)
The <t>PROPKA</t> <t>GUI</t> . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.
Vehicle System Simulator (Vss), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/vehicle system simulator (vss)/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
vehicle system simulator (vss) - by Bioz Stars, 2026-03
90/100 stars
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graphical user interface (gui)  (MathWorks Inc)
90
MathWorks Inc graphical user interface (gui)
The <t>PROPKA</t> <t>GUI</t> . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.
Graphical User Interface (Gui), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/graphical user interface (gui)/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
graphical user interface (gui) - by Bioz Stars, 2026-03
90/100 stars
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matlab/simulink  (MathWorks Inc)
90
MathWorks Inc matlab/simulink
The <t>PROPKA</t> <t>GUI</t> . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.
Matlab/Simulink, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab/simulink/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab/simulink - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


The PROPKA GUI . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.

Journal: BMC Structural Biology

Article Title: Graphical analysis of pH-dependent properties of proteins predicted using PROPKA

doi: 10.1186/1472-6807-11-6

Figure Lengend Snippet: The PROPKA GUI . (A) The main window of the PROPKA GUI for accessing general pK a information about the ionizable residues and their contributions to the pH-dependent free energy of unfolding. (B) The structure display window of VMD for an interactive access to the pK a data for particular ionizable residues. It depicts the structure of Bacillus circulans xylanase [PDB: 1XNB ] as it is displayed, by default, after the structure and the pK a data are loaded, using simplified-style drawing method.

Article Snippet: The PROPKA Graphical User Interface (GUI) presented in this paper is developed to facilitate exploration of the pH-dependent protein properties in a convenient manner by providing a direct link between the structure and the pK a data, predicted by the PROPKA calculations, via the Visual Molecular Dynamics (VMD) program [ ].

Techniques:

Ionizable residues and pK a determinants in the xylanase structure . (A) The figure shows four ionizable residues with the most shifted pK a values in the structure of Bacillus circulans xylanase [PDB: 1XNB ] displayed using the PROPKA GUI. Labels next to each residue give: one-letter residue code with its residue ID, the pK a value and the shift of the pK a from its model value. (B) When an ionizable residue is selected (in this case tyrosine 80), all of its pK a determinants are displayed together with their contributions to the pK a shift shown with the appropriate labels.

Journal: BMC Structural Biology

Article Title: Graphical analysis of pH-dependent properties of proteins predicted using PROPKA

doi: 10.1186/1472-6807-11-6

Figure Lengend Snippet: Ionizable residues and pK a determinants in the xylanase structure . (A) The figure shows four ionizable residues with the most shifted pK a values in the structure of Bacillus circulans xylanase [PDB: 1XNB ] displayed using the PROPKA GUI. Labels next to each residue give: one-letter residue code with its residue ID, the pK a value and the shift of the pK a from its model value. (B) When an ionizable residue is selected (in this case tyrosine 80), all of its pK a determinants are displayed together with their contributions to the pK a shift shown with the appropriate labels.

Article Snippet: The PROPKA Graphical User Interface (GUI) presented in this paper is developed to facilitate exploration of the pH-dependent protein properties in a convenient manner by providing a direct link between the structure and the pK a data, predicted by the PROPKA calculations, via the Visual Molecular Dynamics (VMD) program [ ].

Techniques: Residue